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October 2019

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Subject:
Re: Standardized test image sets for deconvolution
From:
Silas Leavesley <[log in to unmask]>
Reply To:
Confocal Microscopy List <[log in to unmask]>
Date:
Tue, 15 Oct 2019 16:27:38 -0500
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*****
To join, leave or search the confocal microscopy listserv, go to:
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Post images on http://www.imgur.com and include the link in your posting.
*****

Hi Brian,

Thanks and this is indeed a very helpful set of tools and example datasets!

Best regards,

Silas

On 10/15/2019 2:33 PM, Brian Northan wrote:
> *****
> To join, leave or search the confocal microscopy listserv, go to:
> http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
> Post images on http://www.imgur.com and include the link in your posting.
> *****
>
> Hi Silas
>
> You could look at the website for DeconvolutionLab2, they have several real
> and synthetic datasets... though they only have theoretical PSFs and no sub
> resolution bead images, which is unfortunate because it would be nice to be
> able to compare Deconvolution results between theoretical PSF, and a PSF
> derived from beads.
>
> http://bigwww.epfl.ch/deconvolution/index.html#data
>
> I also recommend the DeconvolutionLab2 paper.  It has a nice summary and
> some comparisons of the most widely used algorithms.
>
> http://bigwww.epfl.ch/deconvolution/deconvolutionlab2/sage1701p.pdf
>
> Brian
>
> On Tue, Oct 15, 2019 at 12:12 PM Silas Leavesley <[log in to unmask]>
> wrote:
>
>> *****
>> To join, leave or search the confocal microscopy listserv, go to:
>> http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
>> Post images on http://www.imgur.com and include the link in your posting.
>> *****
>>
>> Hi All,
>>
>> Does anyone know if there are standardized zstack image sets (with
>> corresponding PSFs) available for testing deconvolution algorithms?
>> Thanks!
>>
>> Best regards,
>>
>> Silas
>>
>> --
>> Silas J. Leavesley, Ph.D.
>> Professor
>> Department of Chemical and Biomolecular Engineering
>> Department of Pharmacology
>> Center for Lung Biology
>> University of South Alabama
>> 150 Jaguar Drive, SH4129
>> Mobile, AL 36688
>> ph: (251)-460-6160
>> fax: (251)-461-1485
>> web: http://www.southalabama.edu/centers/bioimaging
>>
-- 
Silas J. Leavesley, Ph.D.
Professor
Department of Chemical and Biomolecular Engineering
Department of Pharmacology
Center for Lung Biology
University of South Alabama
150 Jaguar Drive, SH4129
Mobile, AL 36688
ph: (251)-460-6160
fax: (251)-461-1485
web: http://www.southalabama.edu/centers/bioimaging

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