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August 2005

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Subject:
From:
Hiroyuki Hakozaki <[log in to unmask]>
Reply To:
Confocal Microscopy List <[log in to unmask]>
Date:
Tue, 16 Aug 2005 17:44:20 -0700
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Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Hi Jeff,

> I believe Hiro meant "polarizer at emission side", not excitation side.
 Yes. I meant emission side. I was thinking to put this after scanner
where excitation and emission share their path, so it will work as
emission side.

Hiro.

>
> Other possible solutions:
> 1) If the scanhead allows one to add a laser-line 'notch' filter on the
> emission side, but preferably physically connected to the matching dichroic,
> this should work.
> 2) New emission filters, if they are old; and/or doubling them.
>
> Cheers,
> Jeff
>
> > -----Original Message-----
> > From: Hiroyuki Hakozaki [mailto:[log in to unmask]]
> > Sent: Tuesday, August 16, 2005 4:18 PM
> > To: [log in to unmask]
> > Subject: Re: Reflected light
> >
> >
> > ---------------------- Information from the mail header
> > -----------------------
> > Sender:       Confocal Microscopy List <[log in to unmask]>
> > Poster:       Hiroyuki Hakozaki <[log in to unmask]>
> > Subject:      Re: Reflected light
> > --------------------------------------------------------------
> > -----------------
> >
> > Search the CONFOCAL archive at
> > http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
> >
> > Hi Carol,
> >  If you put polarizer and quoter wave plate in optical path, you might
> > be able to prevent reflected excitation light.
> >
> >  Put polarizer at excitation side and polarizer axis to be same
> > direction with laser polarization if laser is polarized. Locate quoter
> > wave plate for laser wavelength after polarizer - sample side. Quoter
> > wave plate axis need to be 45 degree to polarizer axis to create
> > circular polarization. Reflected laser light has reverse
> > rotation. After
> > passing quoter wave plate, it will be polarized and it is
> > perpendicular
> > to original laser polarization and blocked by polarizer.
> >
> >  Drawback of this method is that You will lose more than half of your
> > fluorescence signal because of polarizer.
> >
> >  We have Radiance2000 from Bio-rad and it has quoter wave plate and
> > polarizer in the optical path as default. I'm not familiar
> > with Leica system.
> >
> > Hiro.
> >
> > > Search the CONFOCAL archive at
> > > http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
> > >
> > > I run a core facility and several of the users grow their cells on
> > > silicon chips, which are very reflective.  If they try to
> > see red and
> > > green fluorescence in the cells with our Leica SP2 confocal system,
> > > the reflected light is so bright that the fluorescence is
> > > overwhelmed.  We tried closing the pinhole to .65 airy disk and that
> > > helped, but the background is still high and signal is
> > lost.  It also
> > > helped to switch to the triple dichroic, relative to the double.
> > > Interestingly, with our old Bio-Rad MRC 600 and our 1024, the
> > > reflected light is not a problem.  However, the signal is
> > low and the
> > > noise is much higher on these systems.
> > > Is there anything I can do to reduce the reflected light on the
> > > Leica?  Why the difference between the systems?
> > >
> > > Thanks,
> > > Carol
> > >
> > > --
> > > <><><><><><><><><><><><><><><><><><><><><><>
> > > Carol Bayles, Manager
> > > Microscopy,  Imaging & Fluorimetry (MIF)
> > > Biotechnology Resource Center
> > > 160a Biotech Bldg
> > > 607-254-4860
> > > www.brc.cornell.edu
> > >
> > > Confocal and Multiphoton Microscopy
> > > Nanobiotechnology Center
> > > www.nbtc.cornell.edu
> > >
> > > Cornell University
> > > Ithaca NY 14853
> >
> > =======================================
> > Hiroyuki Hakozaki
> >
> > National Center for Microscopy & Imaging Research
> > University of California San Diego
> >
> > Address:
> >   9500 Gilman Drive
> >   Basic Science Building #1000
> >   La Jolla, CA 92093-0608, USA
> > Tel: 858 534-2583
> > Fax: 858 534-7497
> > mailto:[log in to unmask]
> > NCMIR web site: http://ncmir.ucsd.edu
> > =======================================
> >

=======================================
Hiroyuki Hakozaki

National Center for Microscopy & Imaging Research
University of California San Diego

Address:
  9500 Gilman Drive
  Basic Science Building #1000
  La Jolla, CA 92093-0608, USA
Tel: 858 534-2583
Fax: 858 534-7497
mailto:[log in to unmask]
NCMIR web site: http://ncmir.ucsd.edu
=======================================

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