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Hi,

if you have overlap in X, Y or Z between pairs of stacks, then
XuvTools can do that. Check it out at http://xuvtools.org its
free and open source software.

Cheers,

     Mario



On 01/04/2012 10:44 AM, Ekaterina PAPUSHEVA wrote:
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> Happy new year to everyone,
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> Does someone know a script that allows to stitch timelapse of Z-stacks with non-matching Z positions?  We have movies consisting of two parts, each part is taken with different Z-settings . Z step and number of planes are the same, but we had to shift the Z-stack start/end upwards as the sample migrated.
>
> Grateful in advance!
> Ekaterina
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