Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
Hi Ann,
Below is a simple macro that will parse through all the images in a
directory, apply 'actions', and overwrite the image using the same
filename. To preserve the original files make copies of the folders
before applying this. If you want to save the processed images with a
different filename it's a little more involved, contact me off list
for help with that. Hope this helps.
Esteban
dir = getDirectory("Choose a Directory ");
list = getFileList(dir);
setBatchMode(true); // to not open images in window, runs up to 6 times faster
for (i=0; i<list.length; i++) {
path = dir + list[i];
open(path);
// INSERT RECORDED ACTIONS HERE
run("Save");
}
On Mon, Mar 3, 2008 at 10:43 AM, Ann Haberman <[log in to unmask]> wrote:
> Search the CONFOCAL archive at
> http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
>
> Hello list!
>
> Since we are talking about ImageJ plugins, does anyone know of a plugin that
> will automate the renaming of files in batch conversions of entire folders.
> I would love to be able to "record" a series of actions on an image, and
> then apply those same actions to all the images in a folder - much like the
> "record actions" function in Photoshop.
>
> That would be a major time saver!
> Ann
>
> Hi All,
>
> Is there a plugin for ImageJ that will allow 3D visualization and allow the
> visualization to be annotated with some measurements (at least distance
> between two points)?
>
> Thanks
> Shalin
> On Sat, Mar 1, 2008 at 1:33 PM, Nishigandha Naik
> <[log in to unmask]> wrote:
> Search the CONFOCAL archive at
> http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
>
> Hi
> If your files are in the format, pic, tiff, jpg, bmp,
> avi,mtg or jif, then you may try using free software
> 'confoal assistant'. 'lsm' format cannot be seen.
> Viewing of single or Z-section images, construction of
> 3D and merging of images is possible.
> Best wishes,
> Nishigandha Naik
>
> --
>
>
> Ann Haberman, PhD
> Department of Laboratory Medicine
> Yale University School of Medicine
> 1 Gilbert St.
> TAC S541
> New Haven, CT 06510
>
> 203-785-7349
> 203-785-5415 (fax)
> [log in to unmask]
>
--
G. Esteban Fernandez, Ph.D.
Associate Director
Molecular Cytology Research Core Facility
University of Missouri
1201 E. Rollins St.
Columbia, MO 65211
573-882-4895
573-884-9676 fax
http://www.biotech.missouri.edu/mcc/
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