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September 2006

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Subject:
From:
Lynda Ellis <[log in to unmask]>
Reply To:
University of Minnesota Biocatalysis/Biodegradation Database <[log in to unmask]>
Date:
Thu, 28 Sep 2006 11:46:26 -0500
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TEXT/PLAIN
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TEXT/PLAIN (38 lines)
       University of Minnesota Biocatalysis/Biodegradation Database
                   Progress Report 142 - September 28, 2006

Thank you for your interest in the UM-BBD.

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- A pathway for tetralin has been added. The tetralin pathway was
   developed by students in the 2005 and 2006 BioC/MicE 5309 class.
   http://umbbd.msi.umn.edu/tet/tet_map.html
   http://srs.ebi.ac.uk/srs6bin/cgi-bin/wgetz?-e+[upathway-id:'tet']

- On UM-BBD reaction pages, the number of hits from Medline searches
   has been updated.  On UM-BBD enzyme pages, the sensitivity and
   specificity of GenBank, GenPept, and PDB searches have been improved,
   and a link to the Enzyme Database at Trinity College, Dublin, has
   been added to all enzymes that have 4-digit EC codes.  Lists of
   all reaction pages and all enzyme pages are available.
   http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=allreacs
   http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=allenzymes

- On UM-BBD compound pages, links to Molecular Models have been removed.
   Molecular models of all UM-BBD compounds are now available from PubChem,
   by following the PubChem Substance Entry link on each compound page.
   Compound information is downloadable at the bottom of each PubChem
   Substance (and Compound) Entry.  A list of all compound pages is
   available.
   http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=allcomps

- On the Links page, a link to the Enzyme Database at Trinity College
   Dublin has been added.
   http://umbbd.msi.umn.edu/resources.html

If you have comments on any aspect of the UM-BBD, please let us know.

Lynda Ellis <[log in to unmask]>

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