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July 2003

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Wed, 23 Jul 2003 10:01:02 -0500 (CDT)
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      University of Minnesota Biocatalysis/Biodegradation Database
                  Progress Report 108 - July 23, 2003

Thank you for your interest in the UM-BBD. 
If you wish to be removed from this mailing list or change your options, 
send a message to:
  [log in to unmask]
with the word 'help' in the subject or body (don't include the quotes),
and you will get back an email message with instructions.

- The pathway for pyrene has been added. This pathway was developed 
  by a student in the 2003 Biocatalysis and Biodegradation class, offered 
  completely over the Internet. 
  http://umbbd.ahc.umn.edu/pyr/pyr_map.html
  http://srs.ebi.ac.uk/srs6bin/cgi-bin/wgetz?-e+[upathway-id:'pyr_map']
  http://www.cbs.umn.edu/class/bioc/5309/idl/

- The Pathway Prediction System (PPS) biotransformation rules have been 
  added to and updated. There are now 222 rules. The system can now handle
  324 (58%) of the 557 pathway branches from 108 UM-BBD compounds 
  containing C, H, O, N, P, S and/or halides that initiate pathways 
  containing two or more reactions. A list of all rules is available.  
  Reaction pages that exemplify up to three rules now list all of them. 
  For an example, see the reaction: 
  cis-3-Chloroacrylic acid to Malonate semialdehyde. 
  http://umbbd.ahc.umn.edu/predict/
  http://umbbd.ahc.umn.edu/servlets/pageservlet?ptype=allrules
  http://umbbd.ahc.umn.edu/servlets/pageservlet?ptype=r&reacID=r0688

- In Biochemical Periodic Tables, there is a new entry for Plutonium (Pu) 
  and updated entries for Copper (Cu), Zinc (Zn), Flourine (F), 
  Chlorine (Cl), Bromine (Br), and Iodine (I).
  http://umbbd.ahc.umn.edu/periodic/
  http://umbbd.ahc.umn.edu/periodic/elements/pu.html
  http://umbbd.ahc.umn.edu/periodic/elements/cu.html
  http://umbbd.ahc.umn.edu/periodic/elements/zn.html
  http://umbbd.ahc.umn.edu/periodic/elements/f.html
  http://umbbd.ahc.umn.edu/periodic/elements/cl.html
  http://umbbd.ahc.umn.edu/periodic/elements/br.html
  http://umbbd.ahc.umn.edu/periodic/elements/i.html

- On the Useful Internet Resources page, a link to the National Safety 
  Council Chemical Backgrounders has been added and the links to the 
  Agricultural Research Service (ARS) Pesticide Properties Database,  
  Thermodynamics of Enzyme-Catalyzed Reactions from the National 
  Institute of Standards and Technology and GenProtEC: E. coli genes 
  and proteins at the Woods Hole Marine Biological Laboratory, have
  been updated.
  http://umbbd.ahc.umn.edu/resources.html

If you have comments on any aspect of the UM-BBD, please let us know.
         
Lynda Ellis <[log in to unmask]>





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