Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
Hello,
You may wish to add ITK (www.itk.org) and VolView to your list
(http://www.kitware.com/products/volview.html).
ITK is an open source toolkit for segmentation and registration of 3D
volumetric data sets. This toolkit is sponsored by the National Library of
Medicine.
VolView is a commercial application for 3D volume visualization. In the
next version (VolView 2.0 - due out in April), VolView will support
multiple component data, and will provide plug-in access to functionality
from VTK or ITK. A "free" version of VolView (with reduced functionality
but still supporting the plug-ins) will be available, as well as a 30-day
trial of the commercial version.
You should also change your VTK link to www.vtk.org.
Lisa S. Avila
Kitware, Inc.
518-371-3971 x103
At 11:10 AM 3/12/2003, Mcnamara, George wrote:
>Search the CONFOCAL archive at
>http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
>
>Here's my list...
>
> Leica LCS confocal software (current version is 2.5.1040 ... better than
>2.968, etc)
> Leica LCS Lite (free minimal version of LCS)
> MetaMorph - Universal Imaging (licensed from AutoQuant)
> AnalyzePC - www/AnalyzeDirect.com
> SlideBook - Intelligent Imaging Innovation
> SimplePCI - Compix
> Zeiss Image Browser
> Amira from TGS.com (nice rendering, weird interface)
> Imaris - Bitplane
> ImageJ / NIH Image - NIH (wayne Rasband + user addins)(freeware)
> Scion Image - Scion port of NIH Image (use ImageJ instead)
> Image Pro+ with 3D Constructor (licensed from AutoQuant)
> AutoDeBlur & AutoVisualize - AutoQuant
> VTK Viewer (freeware) http://www.kitware.com/vtk/index.html
> Tcl/TK - see VTK
> MicroView (based on VTK) (freeware) http://microview.sourceforge.net/
> XnView (free) ... http://www.xnview.com
> NeatImage (free demo) ... http://www.neatimage.com/
> Osiris - (Geneva radiology dept)
> Voxx - Kenneth Dunn (UIPUI)
> Voxblast - Vaytek
> IPLab - Scanalytics
> etdips (clinical imaging i.e. radiology)
> GIMP (http://www.saunalahti.fi/tlillqvi/gimp/index.html)
> Fovea Pro (John & Chris Russ...Reindeer Graphics) (Photoshop plugins)
> UTHSCSA Image
> XV - requires Xwindows (or emulator for Windows) be running
> LivingImage - Xenogen (for bioluminescence molecular imaging in mice, etc)
> IDL - general purpose visualization (and underlying engine for LivingImage
> Matlab - matrix library - be sure to get the Image Processing toolkit (or
>all toolboxes)
>
>
>The scary part is that I have tried most of these. As usual, caveat emptor.
>
>
>
>George McNamara, Ph.D.
>Childrens Hospital Los Angeles - Image Core
>4650 Sunset Blvd, MS 84, SRT 1016
>Los Angeles, CA 90027
>323-669-2548 voice
>323-251-8878 cell
>323-668-7921 fax
>[log in to unmask] <mailto:[log in to unmask]>
>http://shelia/image Image Core Web (CHLA Intranet)
>\\ntapps49\home Image Core Server User Home (Intranet)
>\\ntapps49\appnotes Image Core Application Notes (Intranet)
>http://www.childrenshospitalla.org/research.html CHLA Research Institute
>http://home.earthlink.net/~geomcnamara Personal web site
>
>
>
>
>-----Original Message-----
>From: Mike Bode [mailto:[log in to unmask]]
>Sent: Wednesday, March 12, 2003 7:38 AM
>To: [log in to unmask]
>Subject: Re: 3D image software for visualization, deconvolution.....
>
>
>Search the CONFOCAL archive at
>http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
>
>That's an impressive list!! Very nice!!
>
>We do have a 3D module for our analySIS software, which you might want to
>list. We also have 3D deconvolution software for confocals and brightfield.
>
>mike
>
>
>Michael Bode, Ph.D.
>Soft Imaging System Corp.
>12596 West Bayaud Avenue
>Suite 300
>Lakewood, CO 80228
>===================================
>phone: (888) FIND SIS
> (303) 234-9270
>fax: (303) 234-9271
>email: mailto:[log in to unmask]
>web: http://www.soft-imaging.com
>===================================
>
>
>
>-----Original Message-----
>From: Peter Van Osta [mailto:[log in to unmask]]
>Sent: Wednesday, March 12, 2003 4:09 AM
>To: [log in to unmask]
>Subject: Re: 3D image software for visualization, deconvolution.....
>
>
>Search the CONFOCAL archive at
>http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
>
>Hi,
>
>I have composed a list of 2D and 3D software and put it om my microscopy
>and imaging webpage, scroll down a bit and you will find the title "3D
>Software":
>
>http://ourworld.compuserve.com/homepages/pvosta/pcrimg.htm
>
>The list not only includes 3D software, but also environments to develop
>your own 3D software routines. I am more into "industrial scale" image
>processing or High Content Screening, so I am interested in software
>libraries to use for application development.
>
>Best regards,
>
>Peter Van Osta
>
>Union Biometrica N.V./S.A.
>European Scientific Operations (ESO)
>Cipalstraat 3
>B-2440 Geel
>Belgium
>Tel.: +32 (0)14 570 619
>Fax.: +32 (0)14 570 621
>
>http://www.unionbio.com/
>
>http://ourworld.compuserve.com/homepages/pvosta/cvwww.htm
>
>
>==========================================
>
>Dear all,
>
>We are in the process of making a wish-list for software for a new =
>Bioimaging
>Center which is to be opened in summer 2004. Our idea is that we would =
>like at
>least one license of all those packages which either (a) confocalists
>and
>deconvolutionists usually work with or (b) are excellent anyway. We
>assume =
>that
>a 3D or 4D image stack is already on the disk and go from there.
>Obviously,=
>
>none of it will be bought this year but we have to provide an idea now
>of =
>how
>much money should be allocated to this purpose.
>
>
>So far, with the help of the confocal archive, I came up with the =
>following
>packages:
>
>AutoDeblur 3-D Deconvolution Software Gold Edition with AutoVisualize
>VoxBlast * 3D Visualisation
>Metamorph Offline Imaging Software with Modules for the deconvolution
>with
> (a) PSF and (b) blind deconvolution
>Image Pro Plus
>Amira
>Adobe ELP Collection,
>Huygens Deconvolution
>Bitplane Imaris
>Improvision Volocity
>and of course my favorite ImageJ :-)
>
>
>Can you think of any other must-haves?
>
>Thanks for you input
>
>Steffen
>
>Steffen Dietzel, Dr. rer. nat.
>Department Bioligie II - Humangenetik
>Ludwig-Maximilians-Universit=E4t M=FCnchen
>Richard-Wagner-Str. 10, 80333 M=FCnchen, Germany
>phone: +49/89/2180-6728
>fax: +49/89/2180-6719
>e-mail: [log in to unmask] Web: http://www.dietzellab.de=20
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