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June 2011

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Subject:
From:
James Pawley <[log in to unmask]>
Reply To:
Confocal Microscopy List <[log in to unmask]>
Date:
Mon, 27 Jun 2011 18:10:59 -0700
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>*****
>To join, leave or search the confocal microscopy listserv, go to:
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>
>Hallo,
>thanks everybody for their input regarding this topic.
>I have some results from a simple test.
>
>Long dwell time (200 us) seem to produce essentially the same signal to
>background ratio  as accumulation of 100 images with 2us dwell times:
>signal: 
>
>1 x 200us dwell time:
>                          area (pixels)	mean	STDEV   signal-to-background
>specimen             20812	             181.76	34.44     14.63
>background          20812	              12.42	8.99
>
>100 x 2 us dwell time, Sum of frames
>                           area (pixels)	mean	STDEV 
>signal-to-background
>specimen              20812	             185.28	33.97     14.73
>background           20812	              12.58	8.97
>
>
>The specimen is a Chroma fluorescent slide occupying half of the 
>field of view,
>the other half does not have any sample (= background).
>The Sum was calculated in ImageJ (Image-Stack-Z Project-Sum of Slices).
>
>FYI,
>I also tested for the linearity of the signal versus laser power in the photon
>counring mode to see when the pile-up error would become noticeable.
>Using 10 us dwell time, spectral detector was set to narrow width (2 nm band
>pass)to restrict the photon flux. The signal seems to scale well 
>with intensity,
>with just a slight drop off at the highest laser powers (but some of that drop
>off can be due to photobleahching; after acquisition I zoomed out and the
>scanned area showed as a darker rectangle):
>(results from an area of 16756 pixels)
>                             Specimen             background
>laser power (%)	mean	STDEV      mean	STDEV
>0.1		9.36	7.62         0.67	2.13
>0.2		11.3	8.42         0.65	2
>0.3		13.26	8.89         0.65	2
>0.4		15.21	9.69         0.67	2.1
>0.5		16.85	10.22        0.68	2.09
>1		45.54	16.63        0.68	2.13
>2		82.51	22.64        0.67	2.15
>4		155.69	31.58        0.66	2.09
>8		297.19	43.26        0.73	2.19
>16		567.71	60.79        0.79	2.32
>32		1049.43	82.74        0.86	2.36
>
>
>So it seems that I can count about 100 photons per microsecond without
>having to worry too much about the pile-up.



Then magic is involved. Or something other than what is normally 
called photon counting.  Do try and find out what they do.

Bit it isn't photon counting with a PMT. (Because even fast PMTs make 
single PE pulses that are several ns long and so you would be dead 
for at least 40% of the time at 100 MHz.

Also, I note that your STDEV is NOT equal to the sqr root of the 
mean. I would guess that they have merely calibrated their PMT system 
so that the number in the memory is about equal to the number of 
single PE pulses that occurred in the pixel time.

JP



>Does anybody know how how the
>Olympus's "Hybrid photon counting" works?
>
>Spreadsheed file with more details, graphs are here:
>http://microscopy.tamu.edu/instruments/light-microscopy/fv1000-tests
>
>This folder also contains some of the image files.
>
>
>Sincerely,
>
>Stan Vitha
>Microscopy and Imaging Center
>Texas A&M University


-- 
                    ****************************************
Prof. James B. Pawley,                                     Phone: 604-822-7801 
3D Microscopy of Living Cells: Summer Course   CELL: 778-919-3176
Info at: http://www.3dcourse.ubc.ca
"If it isn't diffraction, it is statistics":Microscopist's complaint, Anon.

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