Sender: |
|
Date: |
Wed, 5 Dec 2012 14:58:20 +0100 |
Reply-To: |
|
Content-Transfer-Encoding: |
quoted-printable |
Subject: |
|
From: |
|
Content-Type: |
text/plain; charset="gb2312" |
In-Reply-To: |
<20121203221456.GA2671@medusa> |
MIME-Version: |
1.0 |
Comments: |
|
Parts/Attachments: |
|
|
*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
*****
Thanks to Melissa the problem was solved in the way as it was described.
Many thanks for sharing the experience.
Regards,
Aro
-----邮件原件-----
发件人: Melissa Linkert [mailto:[log in to unmask]] 代表 Melissa
Linkert
发送时间: Montag, 3. Dezember 2012 23:15
收件人: Aromis
抄送: [log in to unmask];
[log in to unmask];
[log in to unmask]; [log in to unmask];
[log in to unmask]
主题: Re: Fiji opening mvd2 files
Hi Aro,
[Please forgive the cross-posting, the original message was forwarded to
multiple mailing lists and I wish to help everyone at once.]
> I used to use Fiji to open the mvd2 files generated by Volocity and
> things worked well. However after a 'comprehensive' update of Fiji the
> software told me that there is no 'reader plugin' for the file and it
> can not open
> mvd2 anymore. I checked the plugin list the 'loci' plugin in
('Bio-formats'
> the one that could open mvd2 files) is still there and is now a higher
> version.
>
> Does anyone of you know what caused the problem and might have a solution?
The error message that you mention suggests that some of the things needed
by Bio-Formats are not installed in Fiji; it also looks very similar to this
bug report on Fiji's issue tracker:
http://fiji.sc/bugzilla/show_bug.cgi?id=488
I was able to duplicate the same behavior by downloading Fiji Madison, and
running the updater ("Help > Update Fiji") until no more updates were
available.
Starting the updater once more and searching for "slf4j-log4j" with "View
uninstalled files only" selected should bring up one file; if you install
that and restart Fiji then Bio-Formats should be working again.
The bug report above explains the cause in more detail, but the important
point is that this is not a problem in Bio-Formats, so once you install the
missing .jar you should not need a new version.
Alternatively, you could download one of the "continuous release" builds of
Fiji from:
http://fiji.sc/wiki/index.php/Downloads
...as the bug report above mentions that this was recently fixed.
Regards,
-Melissa
On Sun, Dec 02, 2012 at 07:59:24PM +0100, Aromis wrote:
> *****
> To join, leave or search the confocal microscopy listserv, go to:
> http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
> *****
>
> Hello Everyone:
>
> I used to use Fiji to open the mvd2 files generated by Volocity and
> things worked well. However after a 'comprehensive' update of Fiji the
> software told me that there is no 'reader plugin' for the file and it
> can not open
> mvd2 anymore. I checked the plugin list the 'loci' plugin in
('Bio-formats'
> the one that could open mvd2 files) is still there and is now a higher
> version.
>
> Does anyone of you know what caused the problem and might have a solution?
>
> Thank you very much for your help in advance.
>
> Regards,
>
> Aro
|
|
|