Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
Here's my list...
Leica LCS confocal software (current version is 2.5.1040 ... better than
2.968, etc)
Leica LCS Lite (free minimal version of LCS)
MetaMorph - Universal Imaging (licensed from AutoQuant)
AnalyzePC - www/AnalyzeDirect.com
SlideBook - Intelligent Imaging Innovation
SimplePCI - Compix
Zeiss Image Browser
Amira from TGS.com (nice rendering, weird interface)
Imaris - Bitplane
ImageJ / NIH Image - NIH (wayne Rasband + user addins)(freeware)
Scion Image - Scion port of NIH Image (use ImageJ instead)
Image Pro+ with 3D Constructor (licensed from AutoQuant)
AutoDeBlur & AutoVisualize - AutoQuant
VTK Viewer (freeware) http://www.kitware.com/vtk/index.html
Tcl/TK - see VTK
MicroView (based on VTK) (freeware) http://microview.sourceforge.net/
XnView (free) ... http://www.xnview.com
NeatImage (free demo) ... http://www.neatimage.com/
Osiris - (Geneva radiology dept)
Voxx - Kenneth Dunn (UIPUI)
Voxblast - Vaytek
IPLab - Scanalytics
etdips (clinical imaging i.e. radiology)
GIMP (http://www.saunalahti.fi/tlillqvi/gimp/index.html)
Fovea Pro (John & Chris Russ...Reindeer Graphics) (Photoshop plugins)
UTHSCSA Image
XV - requires Xwindows (or emulator for Windows) be running
LivingImage - Xenogen (for bioluminescence molecular imaging in mice, etc)
IDL - general purpose visualization (and underlying engine for LivingImage
Matlab - matrix library - be sure to get the Image Processing toolkit (or
all toolboxes)
The scary part is that I have tried most of these. As usual, caveat emptor.
George McNamara, Ph.D.
Childrens Hospital Los Angeles - Image Core
4650 Sunset Blvd, MS 84, SRT 1016
Los Angeles, CA 90027
323-669-2548 voice
323-251-8878 cell
323-668-7921 fax
[log in to unmask] <mailto:[log in to unmask]>
http://shelia/image Image Core Web (CHLA Intranet)
\\ntapps49\home Image Core Server User Home (Intranet)
\\ntapps49\appnotes Image Core Application Notes (Intranet)
http://www.childrenshospitalla.org/research.html CHLA Research Institute
http://home.earthlink.net/~geomcnamara Personal web site
-----Original Message-----
From: Mike Bode [mailto:[log in to unmask]]
Sent: Wednesday, March 12, 2003 7:38 AM
To: [log in to unmask]
Subject: Re: 3D image software for visualization, deconvolution.....
Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
That's an impressive list!! Very nice!!
We do have a 3D module for our analySIS software, which you might want to
list. We also have 3D deconvolution software for confocals and brightfield.
mike
Michael Bode, Ph.D.
Soft Imaging System Corp.
12596 West Bayaud Avenue
Suite 300
Lakewood, CO 80228
===================================
phone: (888) FIND SIS
(303) 234-9270
fax: (303) 234-9271
email: mailto:[log in to unmask]
web: http://www.soft-imaging.com
===================================
-----Original Message-----
From: Peter Van Osta [mailto:[log in to unmask]]
Sent: Wednesday, March 12, 2003 4:09 AM
To: [log in to unmask]
Subject: Re: 3D image software for visualization, deconvolution.....
Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
Hi,
I have composed a list of 2D and 3D software and put it om my microscopy
and imaging webpage, scroll down a bit and you will find the title "3D
Software":
http://ourworld.compuserve.com/homepages/pvosta/pcrimg.htm
The list not only includes 3D software, but also environments to develop
your own 3D software routines. I am more into "industrial scale" image
processing or High Content Screening, so I am interested in software
libraries to use for application development.
Best regards,
Peter Van Osta
Union Biometrica N.V./S.A.
European Scientific Operations (ESO)
Cipalstraat 3
B-2440 Geel
Belgium
Tel.: +32 (0)14 570 619
Fax.: +32 (0)14 570 621
http://www.unionbio.com/
http://ourworld.compuserve.com/homepages/pvosta/cvwww.htm
==========================================
Dear all,
We are in the process of making a wish-list for software for a new =
Bioimaging
Center which is to be opened in summer 2004. Our idea is that we would =
like at
least one license of all those packages which either (a) confocalists
and
deconvolutionists usually work with or (b) are excellent anyway. We
assume =
that
a 3D or 4D image stack is already on the disk and go from there.
Obviously,=
none of it will be bought this year but we have to provide an idea now
of =
how
much money should be allocated to this purpose.
So far, with the help of the confocal archive, I came up with the =
following
packages:
AutoDeblur 3-D Deconvolution Software Gold Edition with AutoVisualize
VoxBlast * 3D Visualisation
Metamorph Offline Imaging Software with Modules for the deconvolution
with
(a) PSF and (b) blind deconvolution
Image Pro Plus
Amira
Adobe ELP Collection,
Huygens Deconvolution
Bitplane Imaris
Improvision Volocity
and of course my favorite ImageJ :-)
Can you think of any other must-haves?
Thanks for you input
Steffen
Steffen Dietzel, Dr. rer. nat.
Department Bioligie II - Humangenetik
Ludwig-Maximilians-Universit=E4t M=FCnchen
Richard-Wagner-Str. 10, 80333 M=FCnchen, Germany
phone: +49/89/2180-6728
fax: +49/89/2180-6719
e-mail: [log in to unmask] Web: http://www.dietzellab.de=20
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