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March 2008

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Confocal Microscopy List <[log in to unmask]>
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Fri, 7 Mar 2008 11:12:45 -0500
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Confocal Microscopy List <[log in to unmask]>
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Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

If you just want to rename files, a good utility for that purpose is
Renamer:
http://www.snapfiles.com/get/denrenamer.html

Cheers,
Jeff


-----Original Message-----
From: Ann Haberman [mailto:[log in to unmask]] 
Sent: Monday, March 03, 2008 11:43 AM
To: [log in to unmask]
Subject: Re: ImageJ plugin for batch conversions

---------------------- Information from the mail header
-----------------------
Sender:       Confocal Microscopy List <[log in to unmask]>
Poster:       Ann Haberman <[log in to unmask]>
Subject:      Re: ImageJ plugin for batch conversions
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Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal


Hello list!

Since we are talking about ImageJ plugins, does anyone know of a 
plugin that will automate the renaming of files in batch conversions 
of entire folders. I would love to be able to "record" a series of 
actions on an image, and then apply those same actions to all the 
images in a folder - much like the "record actions" function in 
Photoshop.

That would be a major time saver!
Ann

>Hi All,
>
>  Is there a plugin for ImageJ that will allow 3D visualization and 
>allow the visualization to be annotated with some measurements (at 
>least distance between two points)?
>
>Thanks
>Shalin
>
>On Sat, Mar 1, 2008 at 1:33 PM, Nishigandha Naik 
><<mailto:[log in to unmask]>[log in to unmask]> 
>wrote:
>
>Search the CONFOCAL archive at
><http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal>http://listser
v.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
>
>Hi
>
>If your files are in the format, pic, tiff, jpg, bmp,
>avi,mtg or jif, then you may try using free software
>'confoal assistant'. 'lsm' format cannot be seen.
>Viewing of single or Z-section images, construction of
>3D and merging of images is possible.
>Best wishes,
>Nishigandha Naik

-- 

Ann Haberman, PhD
Department of Laboratory Medicine
Yale University School of Medicine
1 Gilbert  St.
TAC S541
New Haven, CT 06510

203-785-7349
203-785-5415 (fax)
[log in to unmask]

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<!doctype html public "-//W3C//DTD W3 HTML//EN">
<html><head><style type="text/css"><!--
blockquote, dl, ul, ol, li { padding-top: 0 ; padding-bottom: 0 }
 --></style><title>Re: ImageJ plugin for batch
conversions</title></head><body>
<div><br></div>
<div>Hello list!</div>
<div><br></div>
<div>Since we are talking about ImageJ plugins, does anyone know of a
plugin that will automate the renaming of files in batch conversions
of entire folders. I would love to be able to &quot;record&quot; a
series of actions on an image, and then apply those same actions to
all the images in a folder - much like the &quot;record actions&quot;
function in Photoshop.</div>
<div><br></div>
<div>That would be a major time saver!</div>
<div>Ann</div>
<div><br></div>
<blockquote type="cite" cite>Hi All,<br>
<br>
&nbsp;Is there a plugin for ImageJ that will allow 3D visualization
and allow the visualization to be annotated with some measurements (at
least distance between two points)?<br>
<br>
Thanks<br>
Shalin<br>
</blockquote>
<blockquote type="cite" cite>On Sat, Mar 1, 2008 at 1:33 PM,
Nishigandha Naik &lt;<a
href="mailto:[log in to unmask]">[log in to unmask]</a
>&gt; wrote:<br>
<blockquote>Search the CONFOCAL archive at<br>
<a
href="http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal"
>http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal</a><br>
<br>
Hi<br>
</blockquote>
<blockquote>If your files are in the format, pic, tiff, jpg, bmp,<br>
avi,mtg or jif, then you may try using free software<br>
'confoal assistant'. 'lsm' format cannot be seen.<br>
Viewing of single or Z-section images, construction of<br>
3D and merging of images is possible.<br>
Best wishes,</blockquote>
<blockquote>Nishigandha Naik</blockquote>
</blockquote>
<div><br></div>
<x-sigsep><pre>-- 
</pre></x-sigsep>
<div><br>
Ann Haberman, PhD<br>
Department of Laboratory Medicine<br>
Yale University School of Medicine<br>
1 Gilbert&nbsp; St.<br>
TAC S541<br>
New Haven, CT 06510<br>
<br>
203-785-7349<br>
203-785-5415 (fax)<br>
[log in to unmask]<br>
</div>
</body>
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