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As far as what confocal to get, it is hard to give you any specific advice. It is
like buying a car. It depends what your users need.
I like them all, each of the big four has their strong points and offers a range
of models. Some of the lower-end models are upgradeable, some are not so
easily. And, as was mentioned in this thread, there are other options, like the
Thor Labs kit, and few others if you are looking for a single-point scanning
confocal system. Spinning disk/micromirror instruments are yet another group.
We have a dual approach for training.
There is a graduate - level course where students learn the theory of image
formation and a range of light microscopy techniques, and receive practical
training on a standard light microscope (BF, DIC, phase contrast,
fluorescence) as well as on a confocal microscope.
For users that just want to learn how to use the confocal microscope I do the
training (2 people max) in two sessions, ~2 hours each.
We start with general and lab safety, biosafety rules (we are BL-1), each new
user is required by our university to have passed an online laser safety
training.
I have a short guide for users to download, it also includes startup/shutdown
procedures.
In the first session we cover the operation of the microscope, what do those
buttons do, setting up Kohler illumination, using standard epifluorescence to
check the sample, and basic functions in the software: scan size, speed,
setting the detector voltage and offset for maximum contrast and to avoid
saturation, choosing fluorescent dyes from the dye database, confocal zoom
and setting the pixel size for Nyquist sampling, sequential scanning to minimize
spectral cross-talk in multi-labeled samples. We also cover how to deal with
weak signals and noise by changing scanning speed, Kalman filtering, opening
the pinhole.
Usually in the first session we only use the 10x and 20x dry objectives and a
standard teaching sample (I use pollen grains).
We also cover the file formats, the importance of saving the original data files,
adding a scale bar, exporting the images for a Powerpoint resentation.
I like to demonstrate the effect of the DIC prism on the confocal image
resolution and signal brightness.
In the second session we cover the use of objectives with coverglass
thickness correction collar (dry 40x and water immersion 60x), using oil
immersion objectives, and general rules how to clean up after using the
immersion optics. Z-stacks - setting the z-step size to Nyquist, adjusting the
laser power or detector voltage to compensate for loss of signal with depth.
Time lapse imaging.
Towards the end of the second session user get to look at their own
specimen, if they have one, and get help with optimizing the imaging
parameters for their sample.
What exactly is covered depends on each user's need. Some people will never
use a water immersion objective, some people only look at thick live samples
and will not use the oil immersion lenses.
I inform the users about the more advanced features, like the photon counting
mode, bi-directional scanning, line-scan and point-scan, FRAP, FRET and
acceptor photobleaching, using a SIM scanner (it is an Olympus FV1000) for
photobleaching/photoactivavtion, Multi-area Time lapse (uses the motorized
stage), assembling complex imaging sequences ("macro"), Raster Image
Correlation Spectroscopy, ... but for 99% of the users this would be more than
they need at the moment and it does not make sense to train them for this.
After the two training sessions the users should be able to use the confocal
microscope more or less independently, with some occasional help. They can
use the instrument during normal operating hours (~9am-5PM). After one or
more sessions, when they are comfortable in using the microscope and do not
need any more help, they let me know and we go through a short practical
test, where they show me they can indeed do the imaging without
endangering themselves or the microscope. After the successful practical test
they become fully qualified users, they get access to the online scheduler and
get a key to the microscope, so they can use it any time.
Even after the training is completed I still like to check on my users, ask how it
goes if they have any issues with their images, and dispense some unsolicited
advice, e.g. that using Alexa488 and Cy3 for dual labeling and colocalization
analysis is not the best idea, there are better dye combinations.
Overall this training scheme works well, we have had minimal problem with
users doing bad things to our microscope. Sometimes I train the students and
then they realize that they use the microscope so infrequently that they are
better off just letting me do the imaging once or twice a year, rather than
trying to re-learn what they have forgotten since the training.
With Regards,
Stan Vitha
Microscopy and Imaging Center
Texas A&M University
http://microscopy.tamu.edu
On Mon, 18 Mar 2013 14:56:50 -0700, jmkrupp jmkrupp <[log in to unmask]>
wrote:
>*****
>To join, leave or search the confocal microscopy listserv, go to:
>http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
>*****
>
>Greetings
>
>Just a quick note to ask if anyone would like to give me some advice about
>getting started with a confocal training program.
>
>We do EM and LM already, thinking of adding LSCM. Any advice about must
>includes, good practice specimens , techniques etc?
>
>How about insights into instrurments, how basic can we go?, what cost range
>should we be thinking.
>
>Thanks
>
>Jon
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