Hi,
We use 1 x PBS, 1% Triton X-100, 1% BSA as a buffer for all steps after 4%
Paraformaldehyde fixation in whole Drosophila brains. This works fine with
anti-betagalactocidase but might not be suitable for other antibodies.
I've also used 0.1% Tween 20 some time ago and it appeared to work fine.
As for using alcholos/xylene, its fine so long as there are no tissues
connected that have pigments in them (we have problems with fluorescent
pigments in the Drosophila retina).
Cheers
Douglas Armstrong
University of Glasgow.