CONFOCALMICROSCOPY Archives

February 2013

CONFOCALMICROSCOPY@LISTS.UMN.EDU

Options: Use Monospaced Font
Show Text Part by Default
Show All Mail Headers

Message: [<< First] [< Prev] [Next >] [Last >>]
Topic: [<< First] [< Prev] [Next >] [Last >>]
Author: [<< First] [< Prev] [Next >] [Last >>]

Print Reply
Subject:
From:
George McNamara <[log in to unmask]>
Reply To:
Date:
Mon, 18 Feb 2013 06:44:28 -0500
Content-Type:
text/plain
Parts/Attachments:
text/plain (111 lines)
*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
*****

Hi Bala,

I cannot help on the electrode purchase, but have suggestions.

1. Molecular Probes (Invitrogen/Life Tech) has a 10 (11?) solution Ca++ 
calibration kit that is the "standard of care". Compare it to your home 
made solutions.
2. Fura-2 (or modest loading of Fura-2/AM) is the live cell standard of 
care. If you have a 340/380 nm ratio rig available, include it.
3. Take Nagai just published a review (in a Symposium issue on Calcium, 
so issue may have additional articles of use):

Pérez Koldenkova V, Nagai T. Genetically encoded Ca(2+) indicators: 
Properties and evaluation. Biochim Biophys Acta. 2013 Jan 22. doi:pii: 
S0167-4889(13)00024-4. 10.1016/j.bbamcr.2013.01.011. [Epub ahead of 
print] PubMed PMID: 23352808.

See in particular the Nano-CaMeleon series for very high affinity.

Note: Mg++ ions often compete with Ca++ - see the paper for more 
information.


4. Extending range of Ca++ ion measurements in cells (and multiplexing 
lots of things):

I figured out how to do multiplex fluorescent (and bioluminescent, so 
Take's Nano-Lanterns are also "in play"). See Feb 5 (2013) ppt and pdf 
inside the download at

http://works.bepress.com/gmcnamara/26/

The 4-curve graph (Okumoto ... Frommer 2005 PNAS) is on glutamate (which 
is both a chinese food additive, neurotransmitter and the entry point of 
glutamine into the Kreb/TCA cycle) but same deal applies to any affinity 
series - including Calcium ions. A table lists 3 Ca++ ion sensors.

I am unaware of a Mg++ biosensor series, but my Tattletales concept 
could by used with a wavelengths compatible conventional dye(s) to Mg++, 
such as Mg-Fura-2. Spatial multiplexing in the pdf (abstract) and ppt 
(poster) features loci in the cell nucleus, but tdPP7, tdMS2, PUF RNA 
binding proteins (leading to PUFFRs: PUF fluorescent reporters, will 
update the ppt in a few days with this), and simply targeting to 
organelles (Rob Singer, peroxisomes, did this years ago in an early 
MS2-GFP paper), can be used to make bright foci of reporters in the 
cytoplasm.

I have placed Tattletales in the public domain (October 2012) and expect 
to "reduce to practice" this summer after I move to a research lab at 
MDACC (Houston) that has the TALEN/Tattletales robot that inspired the 
idea. Speaking of positions - UMiami H.R. will (hopefully) post the 
image core manager (director if anyone negotiates a new job title) on 
its web site this week. I manage three confocal microscopes (LSM710, 
Leica SP5, Leica MP/SP5/FCS/FLIM), a bunch of other microscopes, and 
have a couple hundred users (not all simultaneously).

Sincerely,


George


George McNamara, Ph.D.
University of Miami, Miller School of Medicine (for now)
Cooper and Lee Immunotherapy lab, UT MDACC, Houston, TX (hopefully start 
April 2013).




On 2/17/2013 9:29 PM, Balakrishnan KANNAN (IMCB) wrote:
> *****
> To join, leave or search the confocal microscopy listserv, go to:
> http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
> *****
>
> Dear All,
>
> This is not directly related to microscopy. I still believe that someone might be able to help.
>
> We vary the amount of Ca in our protein solutions by having a constant amount of EGTA and add excess Ca to arrive at the level of Ca we require for our biochemical assays and TITF microscopy. To calculate the free Ca in this EGTA-buffered system we use Maxchealater (http://www.stanford.edu/~cpatton/webmaxc/webmaxclite115.htm).
>
> With some extra bit of money made available to us, we are planning to buy a Ca-meter along with a Ca-electrode and a reference electrode. This will enable us to rule out the uncertainty in the Ca-levels arrived at by using the Maxchealater. When I explored I found Nova analytics (no commercial interest) have a Ca-meter and accessories. Unfortunately, I am not getting good pre-sales technical update from the local vendor.
>
> I want to measure Ca-levels as low as 100 to 10 nanoMolar. 1 mM will be the upper end. Could someone help in identifying the appropriate Ca-meter?
>
> Regards,
> Bala
>
> ##################################################
> Balakrishnan Kannan , Ph.D.,
> Institute of Molecular and Cell Biology,
> BR Lab, Proteos,
> 61, Biopolis Drive,
> Singapore 138 673
> e-mail: [log in to unmask]<mailto:[log in to unmask]>
> Ph: +65-6586 9831
> Fax: +65-6779 1117
> ##################################################
>
>
>
> Note: This message may contain confidential information. If this Email/Fax has been sent to you by mistake, please notify the sender and delete it immediately. Thank you.
>
>    

ATOM RSS1 RSS2