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Dear All-

FWIW, discussion is continuing on image.sc:

https://forum.image.sc/t/management-of-core-facility-uploads/94225/3

Cheers,

Jason

On Sat, Mar 30, 2024 at 8:24 AM Khoroshyy Petro <[log in to unmask]> wrote:

> *****
> To join or leave the confocal microscopy listserv or to change your email
> address, go to:
> https://lists.umn.edu/cgi-bin/wa?SUBED1=confocalmicroscopy&A=1
> Post images on http://www.imgur.com and include the link in your posting.
> *****
>
> Hi Gary
> What do you mean by nonconfocal data? Wide field images, or do they use it
> to store wedding photos,  MD trajectories and music?
> Best.
> Petro.
>
>
> On Fri, 29 Mar 2024 at 20:41, Gary Laevsky <[log in to unmask]>
> wrote:
>
> > *****
> > To join or leave the confocal microscopy listserv or to change your email
> > address, go to:
> > https://lists.umn.edu/cgi-bin/wa?SUBED1=confocalmicroscopy&A=1
> > Post images on http://www.imgur.com and include the link in your
> posting.
> > *****
> >
> > Hi Doug,
> >
> > Great question! And following.
> >
> > We have a confocal server. Every once in awhile I have to dig into a user
> > folder for something.
> >
> > I inevitably find non confocal data.
> >
> > How can this possibly be curated?!
> >
> >
> > Best,
> >
> > Gary
> >
> > > On Mar 29, 2024, at 3:17 PM, Cromey, Douglas W - (dcromey) <
> > [log in to unmask]> wrote:
> > >
> > > *****
> > > To join or leave the confocal microscopy listserv or to change your
> > email address, go to:
> > > https://lists.umn.edu/cgi-bin/wa?SUBED1=confocalmicroscopy&A=1
> > > Post images on http://www.imgur.com and include the link in your
> > posting.
> > > *****
> > >
> > > Hi all,
> > >
> > > This isn't specifically a confocal question, but I hope you don't mind
> > me dropping this in here.
> > >
> > > Our institution's OMERO server is relatively new, a little over a year
> > old. The handful of projects so far have been primarily driven by a
> single
> > faculty member or a research group (several PIs). This fits the
> > university's administrative mandate for the server.
> > >
> > > We were recently approached by a campus core facility that wants to use
> > OMERO to make slide scans available to faculty who need to review the
> scans
> > as a means for selecting ROIs for spatial transcriptomics. In addition to
> > our university having a large campus, we also have a second medical
> school
> > located in a different city, so OMERO would be a useful tool for this
> > core...
> > >
> > > Here's my dilemma, I see the potential for two kinds of users:
> > >
> > >
> > >  *   USER A - has bought into OMERO and uses it for their lab's image
> > data. The core would upload the data and it would be transferred into
> that
> > lab's group to be managed by them. No real problem here.
> > >
> > >
> > >  *   USER B - is not interested in using OMERO, and maybe doesn't do
> > much imaging at all. OMERO just happens to be a convenient way to solve
> > this particular problem and then they are done. This has the potential
> for
> > orphan data (it technically doesn't belong to the core that uploaded it)
> > that is not particularly well managed.
> > >
> > > For those of you in similar circumstances, do you have data management
> > policies that keep the situation related to the core and USER B under
> > control? I'd love to tap into the community's collective wisdom on this.
> > >
> > > Thanks!
> > >
> > > Doug
> > >
> > >
> > > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> > > Douglas W. Cromey, M.S. | Researcher/Scientist IV
> > > Core Facilities, Research, Innovation & Impact, University of Arizona
> > > [log in to unmask]<mailto:[log in to unmask]>  |  520-626-2824
> > >
> > > Life Sciences North, Room 463
> > > 1333 N. Martin Ave, Tucson, AZ  85721 USA
> > >
> > > UA Microscopy Alliance - http://microscopy.arizona.edu/
> > > A collaborative effort to bring information about shared microscopy
> > > facilities to the University of Arizona and the community.
> >
>


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